PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011613-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 299aa    MW: 32839 Da    PI: 7.6226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011613-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-1380123855
                    HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     Er RR+++++ f++L  llP++      K +K++i+ +Av+YIk Lq
  NNU_011613-RA  80 TERERRKKMRNMFSNLHALLPHL----PAKADKSTIVDEAVNYIKTLQ 123
                    6*********************6....39******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.66872122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1674134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1576136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.61E-1177120No hitNo description
SMARTSM003538.0E-1080128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1080123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSEERGDTNF WENSWAFANS DNSGGSEEKS GNKPPQCSNS QSPTATMTVP MGSQKRGRNG  60
ASKNGKGSAG EPDHEIHIWT ERERRKKMRN MFSNLHALLP HLPAKADKST IVDEAVNYIK  120
TLQQSLQKLQ KQRLEMIQGA TIVDFGSSPN VAPPALTLDS RESFLADHGS ASGLAKATTS  180
THSSLLVPRS PSCFQTWSSP NVVLSVYGDE AQISLCSPRK PGLLPTIFYV LEKHKLEVIT  240
AHISSDYYRT MCMIHVQANG TADQFPELHL LPTSGNCMDS GSVQPQLALE LQMLKQRNE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263710.10.0PREDICTED: transcription factor bHLH95
TrEMBLA5B4T91e-111A5B4T9_VITVI; Putative uncharacterized protein
STRINGVIT_03s0063g00170.t011e-111(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-37bHLH family protein